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Updates the requirements on RecursiveArrayTools, Optimization, OptimizationOptimJL, DifferenceEquations, Distributions, ChainRulesCore, PDMats, DiffEqBase, Plots, Zygote, DataFrames, FiniteDiff, DelimitedFiles and ChainRulesTestUtils to permit the latest version.
Updates RecursiveArrayTools to 3.49.0

Release notes

Sourced from RecursiveArrayTools's releases.

v3.49.0

RecursiveArrayTools v3.49.0

Diff since v3.48.0

Merged pull requests:

Closed issues:

  • Allow vector-like init for ArrayPartitions/VectorOfArrays (#544)
Commits
  • 14fa325 Merge pull request #548 from SciML/ChrisRackauckas-patch-3
  • 92904e5 Update Project.toml
  • f7725f9 Merge pull request #546 from rokke-git/vectors
  • 334bd95 use new syntax in tests
  • 51da3fe add docstrings
  • a207ed7 adds convenient vector-like syntax
  • 19e9c4c Merge pull request #545 from ChrisRackauckas-Claude/replace-buildkite-with-gha
  • eaea4e0 Replace Buildkite CI with GitHub Actions self-hosted runners
  • 428b1be Merge pull request #542 from JoshuaLampert/fix-recursivecopy
  • d443b77 Merge branch 'master' into fix-recursivecopy
  • Additional commits viewable in compare view

Updates Optimization to 5.5.0

Release notes

Sourced from Optimization's releases.

v5.5.0

Optimization v5.5.0

Diff since v5.4.0

Merged pull requests:

Closed issues:

  • Broken links on the website (#1144)
  • First example not working? (#1149)
  • Evolutionary optimizers not working (#1151)
Changelog

Sourced from Optimization's changelog.

v4 Breaking changes

  1. The main change in this breaking release has been the way mini-batching is handled. The data argument in the solve call and the implicit iteration of that in the callback has been removed, the stochastic solvers (Optimisers.jl and Sophia) now handle it explicitly. You would now pass in a DataLoader to OptimizationProblem as the second argument to the objective etc (p) if you want to do minibatching, else for full batch just pass in the full data.

  2. The support for extra returns from objective function has been removed. Now the objective should only return a scalar loss value, hence callback doesn't take extra arguments other than the state and loss value.

Commits
  • 0a09996 Merge pull request #1161 from ChrisRackauckas-Claude/bump-minor-versions
  • d2439da Bump minor versions on all sub-packages for SciMLLogging/OptimizationBase v5
  • 8245416 Merge pull request #1157 from jClugstor/scimllogging
  • e45c9e7 bump compat for docs project
  • 331cf14 bump OptimizationBase, bump lower compat bounds
  • 40abdeb add support for setting Ipopt verbosity level
  • 598b5f6 reformat
  • 87e2c3c add compat entry
  • 0a99856 add SciMLLogging as test dep
  • 1433d1c fixes for MadNLP and PRIMA
  • Additional commits viewable in compare view

Updates OptimizationOptimJL to 0.4.11

Commits

Updates DifferenceEquations to 1.0.0

Commits

Updates Distributions to 0.25.123

Release notes

Sourced from Distributions's releases.

v0.25.123

Distributions v0.25.123

Diff since v0.25.122

Merged pull requests:

Closed issues:

  • Sampling from von Mises Fisher yields NaN (#1423)
  • inv(Σ) fails with StaticArrays (#1826)
  • Issue with Von Mises-Fisher sampler returning NaN points (#2018)
Commits

Updates ChainRulesCore to 1.26.0

Release notes

Sourced from ChainRulesCore's releases.

v1.26.0

ChainRulesCore v1.26.0

Diff since v1.25.2

Merged pull requests:

Commits
  • 414b660 Update Project.toml
  • 124e0cb Merge pull request #698 from ChrisRackauckas-Claude/update-compat-bounds-2025
  • 1d5c651 Update Downgrade.yml
  • 6facda3 Create Downgrade.yml
  • 632c0dc Update compat bounds to exclude releases >1 year old
  • f396d36 Merge pull request #697 from ChrisRackauckas-Claude/bump-julia-v1.10
  • f3a13a6 Merge pull request #647 from JuliaDiff/ox/authors
  • 0b98232 Merge pull request #694 from JuliaDiff/compathelper/new_version/2025-06-23-00...
  • 69bedfd Merge pull request #696 from abhro/favicon
  • 468f8a7 Bump Julia lower bound to v1.10 and update dependencies
  • Additional commits viewable in compare view

Updates PDMats to 0.11.37

Release notes

Sourced from PDMats's releases.

v0.11.37

PDMats v0.11.37

Diff since v0.11.36

Merged pull requests:

Commits

Updates RecursiveArrayTools to 3.49.0

Release notes

Sourced from RecursiveArrayTools's releases.

v3.49.0

RecursiveArrayTools v3.49.0

Diff since v3.48.0

Merged pull requests:

Closed issues:

  • Allow vector-like init for ArrayPartitions/VectorOfArrays (#544)
Commits
  • 14fa325 Merge pull request #548 from SciML/ChrisRackauckas-patch-3
  • 92904e5 Update Project.toml
  • f7725f9 Merge pull request #546 from rokke-git/vectors
  • 334bd95 use new syntax in tests
  • 51da3fe add docstrings
  • a207ed7 adds convenient vector-like syntax
  • 19e9c4c Merge pull request #545 from ChrisRackauckas-Claude/replace-buildkite-with-gha
  • eaea4e0 Replace Buildkite CI with GitHub Actions self-hosted runners
  • 428b1be Merge pull request #542 from JoshuaLampert/fix-recursivecopy
  • d443b77 Merge branch 'master' into fix-recursivecopy
  • Additional commits viewable in compare view

Updates DiffEqBase to 6.211.0

Release notes

Sourced from DiffEqBase's releases.

v6.211.0

DiffEqBase v6.211.0

Diff since v6.210.1

Merged pull requests:

Closed issues:

  • Better Atom color choices (#128)
  • Strange Behaviour of No Recompile Mode (#226)
  • Release memory after solve (#1289)
Commits
  • cf00f91 Update Project.toml
  • bac318c Merge pull request #1293 from MilesCranmerBot/wave2-dq-compat
  • 0bd73ec fix: wire DynamicQuantities extension and add tests
  • 2c52268 fix: add DynamicQuantities extension for unitful factorization paths
  • d202eff Merge pull request #1291 from ChrisRackauckas-Claude/precompile-subarray-dual...
  • 0ba42fc Bump tolerance on community callback test
  • 1e39d25 Remove expression-specific broadcast patterns, keep only generic building blocks
  • 0e2cae8 Add positive-sum SubArray broadcast pattern to precompile workload
  • d1e39c6 Add precompile workload for Dual number and SubArray broadcast operations
  • 7dfa3b8 Update Project.toml
  • Additional commits viewable in compare view

Updates DifferenceEquations to 1.0.0

Commits

Updates Plots to 1.41.6

Release notes

Sourced from Plots's releases.

Plots-v1.41.6

What's Changed

Full Changelog: JuliaPlots/Plots.jl@Plots-v1.41.5+docs...Plots-v1.41.6

Changelog

Sourced from Plots's changelog.

Plots.jl NEWS

Breaking changes

v2

  • deprecated backends pgfplots and pyplot removed
  • deprecated keyword orientation removed
  • backends are extensions now so the backend code must be explicitly loaded using import with the backend package, e.g. 
    using Plots
import GR # loads backend code

  • Types are no longer part of the Plots API this affects
    • Shape, which is now shape
  • The default label is now :none, use :auto to restore the previous behaviour
  • UnitfulExt changes:
    • The P_str macro is no longer provided as API. The intended goal was simply to not put units on axis labels which were "protected strings". To achieve this now, pass unitformat=:nounit.
    • The axis option unitformat=:none, unitformat=nothing, and unitformat=false previously printed the axis guide as string(label, " ", unit). That behavior is now moved to unitformat=:space, and :none, nothing, and false print the axis guide without units.

notes on release changes, ongoing development, and future planned work

NOTE: this file is deprecated, see the TagBot auto-generated changelogs instead

0.28.3

  • support generalized array interface
  • save to pdf, svg and eps in plotlyjs
  • fix for clims in line_z
  • optimize heatmap logic in gr

0.26.3

  • fix vline with dates
  • fix PyPlot logscale bug
  • avoid annotation clipping for PyPlot
  • allow plotting of Any vectors and 3D plotting again in convertToAnyVector
  • specify legend title font in GR and PyPlot
  • delete pushtomaster.sh
  • use === nothing

0.26.2

  • improve empty animation build error

... (truncated)

Commits

Updates Zygote to 0.7.10

Release notes

Sourced from Zygote's releases.

v0.7.10

Zygote v0.7.10

Diff since v0.7.9

Merged pull requests:

Commits

Updates DataFrames to 1.8.1

Release notes

Sourced from DataFrames's releases.

v1.8.1

DataFrames v1.8.1

Diff since v1.8.0

Merged pull requests:

Changelog

Sourced from DataFrames's changelog.

DataFrames.jl v1.8.0 Release Notes

Ecosystem compatibility changes

  • Make DataFrames.jl hashing consistent with Julia 1.13 and take into account column names when hashing AbstractDataFrame (#3507)
  • Require Julia 1.10 and add PrettyTables.jl v3 support (#3510)

DataFrames.jl v1.7.1 Release Notes

Julia compatibility change

  • Make DataFrames.jl support DataStructures.jl version 0.19 (#3503)

DataFrames.jl v1.7.0 Release Notes

New functionalities

  • Allow passing multiple values to add in push!, pushfirst!, append!, and prepend! (#3372)
  • rename and rename! now allow to apply a function transforming column names only to a subset of the columns specified by the cols keyword argument (#3380)
  • mapcols and mapcols! now allow to apply a function transforming columns only to a subset of the columns specified by the cols keyword argument (#3386)

Bug fixes

  • Correctly throw an error if negative number of rows is passed to first or last (#3402)
  • Always use the default thread pool for multithreaded operations, instead of using the interactive thread pool when Julia was started with -tM,N with N > 0 (#3385)
  • Correctly return Bool[] in the nonunique function applied to a data frame with a pulled column that has zero levels in the pool (#3393)
  • Correctly index eachrow and eachcol with CartesianIndex (#3413)
  • Correctly handle non-standard integers when converting them to BigInt (#3419)

Removed deprecations

... (truncated)

Commits
  • 00cd7d0 avoid defining a one arg hash since it has some invalidation issues (#3516)
  • 567013c Prepare for 1.8 release (#3512)
  • a0650b1 Adjust codebase to the fact that we require at least Julia 1.10 (#3513)
  • fe224cb PrettyTables.jl v3 (#3510)
  • 9277022 Bump actions/checkout from 4 to 5 (#3511)
  • d488c79 update hashing to Julia 1.13 and use column names in data frame hashing (#3507)
  • 3f2e837 Update Project.toml - prepare for 1.7.1 patch release (#3506)
  • 48563e3 Update categorical.md after CategoricalArrays.jl release (#3504)
  • 01076c7 CompatHelper: bump compat for DataStructures to 0.19, (keep existing compat) ...
  • eaa0075 Document DataFrame definition in code file using CSV.jl (#3501)
  • Additional commits viewable in compare view

Updates FiniteDiff to 2.29.0

Commits

Updates DelimitedFiles to 1.9.1

Commits

Updates ChainRulesTestUtils to 1.13.1

Commits

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@dependabot
Bump the all-julia-packages group across 3 directories with 14 updates
0e55d3c 
Updates the requirements on [RecursiveArrayTools](https://github.com/SciML/RecursiveArrayTools.jl), [Optimization](https://github.com/SciML/Optimization.jl), [OptimizationOptimJL](https://github.com/SciML/Optimization.jl), [DifferenceEquations](https://github.com/SciML/DifferenceEquations.jl), [Distributions](https://github.com/JuliaStats/Distributions.jl), [ChainRulesCore](https://github.com/JuliaDiff/ChainRulesCore.jl), [PDMats](https://github.com/JuliaStats/PDMats.jl), [DiffEqBase](https://github.com/SciML/DiffEqBase.jl), [Plots](https://github.com/JuliaPlots/Plots.jl), [Zygote](https://github.com/FluxML/Zygote.jl), [DataFrames](https://github.com/JuliaData/DataFrames.jl), [FiniteDiff](https://github.com/JuliaDiff/FiniteDiff.jl), [DelimitedFiles](https://github.com/JuliaData/DelimitedFiles.jl) and [ChainRulesTestUtils](https://github.com/JuliaDiff/ChainRulesTestUtils.jl) to permit the latest version.

Updates `RecursiveArrayTools` to 3.49.0
- [Release notes](https://github.com/SciML/RecursiveArrayTools.jl/releases)
- [Commits](SciML/RecursiveArrayTools.jl@v2.34.0...v3.49.0)

Updates `Optimization` to 5.5.0
- [Release notes](https://github.com/SciML/Optimization.jl/releases)
- [Changelog](https://github.com/SciML/Optimization.jl/blob/master/NEWS.md)
- [Commits](SciML/Optimization.jl@v3.0.0...v5.5.0)

Updates `OptimizationOptimJL` to 0.4.11
- [Release notes](https://github.com/SciML/Optimization.jl/releases)
- [Changelog](https://github.com/SciML/Optimization.jl/blob/master/NEWS.md)
- [Commits](https://github.com/SciML/Optimization.jl/commits)

Updates `DifferenceEquations` to 1.0.0
- [Release notes](https://github.com/SciML/DifferenceEquations.jl/releases)
- [Commits](https://github.com/SciML/DifferenceEquations.jl/commits)

Updates `Distributions` to 0.25.123
- [Release notes](https://github.com/JuliaStats/Distributions.jl/releases)
- [Commits](JuliaStats/Distributions.jl@0.2.2...v0.25.123)

Updates `ChainRulesCore` to 1.26.0
- [Release notes](https://github.com/JuliaDiff/ChainRulesCore.jl/releases)
- [Commits](JuliaDiff/ChainRulesCore.jl@v0.1.0...v1.26.0)

Updates `PDMats` to 0.11.37
- [Release notes](https://github.com/JuliaStats/PDMats.jl/releases)
- [Commits](JuliaStats/PDMats.jl@v0.1.1...v0.11.37)

Updates `RecursiveArrayTools` to 3.49.0
- [Release notes](https://github.com/SciML/RecursiveArrayTools.jl/releases)
- [Commits](SciML/RecursiveArrayTools.jl@v2.34.0...v3.49.0)

Updates `DiffEqBase` to 6.211.0
- [Release notes](https://github.com/SciML/DiffEqBase.jl/releases)
- [Commits](SciML/DiffEqBase.jl@v0.0.1...v6.211.0)

Updates `DifferenceEquations` to 1.0.0
- [Release notes](https://github.com/SciML/DifferenceEquations.jl/releases)
- [Commits](https://github.com/SciML/DifferenceEquations.jl/commits)

Updates `Plots` to 1.41.6
- [Release notes](https://github.com/JuliaPlots/Plots.jl/releases)
- [Changelog](https://github.com/JuliaPlots/Plots.jl/blob/v2/NEWS.md)
- [Commits](JuliaPlots/Plots.jl@Plots-v1.41.5+docs...Plots-v1.41.6)

Updates `Zygote` to 0.7.10
- [Release notes](https://github.com/FluxML/Zygote.jl/releases)
- [Commits](FluxML/Zygote.jl@v0.2.0...v0.7.10)

Updates `DataFrames` to 1.8.1
- [Release notes](https://github.com/JuliaData/DataFrames.jl/releases)
- [Changelog](https://github.com/JuliaData/DataFrames.jl/blob/main/NEWS.md)
- [Commits](JuliaData/DataFrames.jl@v0.0.0...v1.8.1)

Updates `FiniteDiff` to 2.29.0
- [Release notes](https://github.com/JuliaDiff/FiniteDiff.jl/releases)
- [Commits](https://github.com/JuliaDiff/FiniteDiff.jl/commits)

Updates `DelimitedFiles` to 1.9.1
- [Release notes](https://github.com/JuliaData/DelimitedFiles.jl/releases)
- [Commits](JuliaData/DelimitedFiles.jl@v1.9.0...v1.9.1)

Updates `ChainRulesTestUtils` to 1.13.1
- [Release notes](https://github.com/JuliaDiff/ChainRulesTestUtils.jl/releases)
- [Commits](JuliaDiff/ChainRulesTestUtils.jl@v0.1.0...v1.13.1)

---
updated-dependencies:
- dependency-name: RecursiveArrayTools
  dependency-version: 3.49.0
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: Optimization
  dependency-version: 5.5.0
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: OptimizationOptimJL
  dependency-version: 0.4.11
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: DifferenceEquations
  dependency-version: 1.0.0
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: Distributions
  dependency-version: 0.25.123
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: ChainRulesCore
  dependency-version: 1.26.0
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: PDMats
  dependency-version: 0.11.37
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: RecursiveArrayTools
  dependency-version: 3.49.0
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: DiffEqBase
  dependency-version: 6.211.0
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: DifferenceEquations
  dependency-version: 1.0.0
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: Plots
  dependency-version: 1.41.6
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: Zygote
  dependency-version: 0.7.10
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: DataFrames
  dependency-version: 1.8.1
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: FiniteDiff
  dependency-version: 2.29.0
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: DelimitedFiles
  dependency-version: 1.9.1
  dependency-type: direct:production
  dependency-group: all-julia-packages
- dependency-name: ChainRulesTestUtils
  dependency-version: 1.13.1
  dependency-type: direct:production
  dependency-group: all-julia-packages
...

Signed-off-by: dependabot[bot] <support@github.com>
@dependabot dependabot Bot added dependencies Pull requests that update a dependency file julia Pull requests that update julia code labels Mar 30, 2026
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dependabot Bot commented on behalf of github Apr 6, 2026

Dependabot tried to update this pull request, but something went wrong. We're looking into it, but in the meantime you can retry the update by commenting @dependabot recreate.

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dependabot Bot commented on behalf of github Apr 9, 2026

Dependabot tried to update this pull request, but something went wrong. We're looking into it, but in the meantime you can retry the update by commenting @dependabot recreate.

@ChrisRackauckas ChrisRackauckas mentioned this pull request Apr 9, 2026
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dependabot Bot commented on behalf of github Apr 10, 2026

Looks like these dependencies are updatable in another way, so this is no longer needed.

@dependabot dependabot Bot closed this Apr 10, 2026
@dependabot dependabot Bot deleted the dependabot/julia/all-julia-packages-6f49406fb6 branch April 10, 2026 00:52
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